isofit.utils.analytical_line
============================

.. py:module:: isofit.utils.analytical_line


Classes
-------

.. autoapisummary::

   isofit.utils.analytical_line.Worker


Functions
---------

.. autoapisummary::

   isofit.utils.analytical_line.retrieve_winidx
   isofit.utils.analytical_line.analytical_line
   isofit.utils.analytical_line.cli


Module Contents
---------------

.. py:function:: retrieve_winidx(config)

.. py:function:: analytical_line(rdn_file: str, loc_file: str, obs_file: str, isofit_dir: str, isofit_config: str = None, segmentation_file: str = None, n_atm_neighbors: list = [20], n_cores: int = -1, num_iter: int = 1, smoothing_sigma: list = [2], output_rfl_file: str = None, output_unc_file: str = None, atm_file: str = None, skyview_factor_file: str = None, loglevel: str = 'INFO', logfile: str = None, initializer: str = 'algebraic', segmentation_size: int = 40) -> None

   TODO: Description


.. py:class:: Worker(config: Config, fm: isofit.core.forward.ForwardModel, surface_class_str: str, class_idx_pairs: numpy.array, full_statevector: list, full_idx_surface: numpy.array, full_idx_surf_rfl: numpy.array, full_idx_RT: numpy.array, rdn_file: str, loc_file: str, obs_file: str, atm_file: str, subs_state_file: str, lbl_file: str, rfl_output: str, unc_output: str, non_rfl_output: str, non_rfl_unc_output: str, num_iter: int, loglevel: str, logfile: str, initializer: str, skyview_factor_file: str)

   Bases: :py:obj:`object`


   .. py:attribute:: config


   .. py:attribute:: fm


   .. py:attribute:: surface_class_str


   .. py:attribute:: class_idx_pairs


   .. py:attribute:: esd


   .. py:attribute:: full_statevector


   .. py:attribute:: full_idx_surface


   .. py:attribute:: full_idx_surf_rfl


   .. py:attribute:: full_idx_RT


   .. py:attribute:: n_rfl_bands


   .. py:attribute:: n_non_rfl_bands


   .. py:attribute:: winidx


   .. py:attribute:: rdn


   .. py:attribute:: loc


   .. py:attribute:: obs


   .. py:attribute:: rt_state


   .. py:attribute:: subs_state


   .. py:attribute:: lbl


   .. py:attribute:: n_lines


   .. py:attribute:: n_samples


   .. py:attribute:: rfl_outpath


   .. py:attribute:: unc_outpath


   .. py:attribute:: non_rfl_outpath


   .. py:attribute:: non_rfl_unc_outpath


   .. py:attribute:: completed_spectra
      :value: 0



   .. py:attribute:: hash_table


   .. py:attribute:: hash_size


   .. py:attribute:: subs_state_file


   .. py:attribute:: lbl_file


   .. py:attribute:: atm_bands
      :value: []



   .. py:attribute:: num_iter


   .. py:attribute:: initializer


   .. py:method:: run_chunks(line_breaks: tuple, fill_value: float = -9999.0) -> None

      TODO: Description



.. py:function:: cli(**kwargs)

   Execute the analytical line algorithm