#! /usr/bin/env python3
#
# Copyright 2018 California Institute of Technology
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# ISOFIT: Imaging Spectrometer Optimal FITting
# Author: Philip G. Brodrick, philip.brodrick@jpl.nasa.gov
from typing import Dict, List, Type
import numpy as np
from isofit.configs.base_config import BaseConfigSection
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class OutputConfig(BaseConfigSection):
"""
Output file(s) configuration.
"""
def __init__(self, sub_configdic: dict = None):
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self._estimated_state_file_type = str
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self.estimated_state_file = None
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self._estimated_reflectance_file_type = str
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self.estimated_reflectance_file = None
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self._estimated_emission_file_type = str
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self.estimated_emission_file = None
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self._modeled_radiance_file_type = str
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self.modeled_radiance_file = None
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self._apparent_reflectance_file_type = str
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self.apparent_reflectance_file = None
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self._path_radiance_file_type = str
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self.path_radiance_file = None
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self._simulated_measurement_file_type = str
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self.simulated_measurement_file = None
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self._algebraic_inverse_file_type = str
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self.algebraic_inverse_file = None
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self._atmospheric_coefficients_file_type = str
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self.atmospheric_coefficients_file = None
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self._radiometry_correction_file_type = str
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self.radiometry_correction_file = None
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self._spectral_calibration_file_type = str
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self.spectral_calibration_file = None
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self._posterior_uncertainty_file_type = str
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self.posterior_uncertainty_file = None
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self._plot_surface_components_type = bool
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self.plot_surface_components = False
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self._mcmc_samples_file_type = str
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self.mcmc_samples_file = None
self.set_config_options(sub_configdic)
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def _check_config_validity(self) -> List[str]:
errors = list()
# TODO: add flags for rile overright, and make sure files don't exist if not checked?
return errors
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def get_all_output_file_names(self):
keys = []
for key in self._get_nontype_attributes():
if hasattr(self, "_{}_header".format(key)):
keys.append(key)
return keys
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def get_output_files(self):
names = self.get_all_output_file_names()
elements = [getattr(self, name) for name in names]
headers = [getattr(self, "_{}_header".format(name)) for name in names]
valid = [x is not None for x in elements]
elements = [elements[x] for x in range(len(elements)) if valid[x]]
headers = [headers[x] for x in range(len(headers)) if valid[x]]
names = [names[x] for x in range(len(names)) if valid[x]]
order = np.argsort(names)
elements = [elements[idx] for idx in order]
headers = [headers[idx] for idx in order]
names = [names[idx] for idx in order]
return elements, headers, names